Chromosome 9 finally reveals its secrets

It’s taken a huge international collaboration, including 3 MND Association-funded scientists, to discover a genetic mistake that appears to cause almost 40% of cases of familial (inherited) MND – that’s nearly twice as many as are caused by mutations in the SOD1 gene and more than three times as many as are caused by TDP-43 and FUS combined. Yet despite the fact that it’s relatively common, the rogue gene proved especially difficult to find.

Digging for genes

Our genetic code is arranged into 23 pairs of subunits called chromosomes. Earlier work had homed in on an area on chromosome 9 that appeared to be significantly associated with both MND and the related neurodegenerative disease frontotemporal dementia (FTD), but nobody could drill down as far as the problem gene itself. As a result, chromosome 9 became something of an ‘archaeological dig site’ for MND researchers, with several groups using cutting edge techniques to try and excavate the elusive causative gene that they knew was lurking somewhere in the short arm of this chromosome. The successful international team, which included almost 60 scientists at 37 institutes, finally discovered the exact location and nature of the aberrant genetic code by looking in the most unlikely of places – in the stretches of DNA that do not actually provide any instructions for building proteins, otherwise known as non-coding DNA.

What did the researchers unearth?

The research team studied DNA samples from a Welsh family affected by inherited MND and FTD that was already known to be associated with chromosome 9, as well as samples from a similar Dutch family and a large number of Finnish inherited and non-inherited MND cases. In among the non-coding DNA in a chromosome 9 gene called C9ORF72, the researchers found a 6-letter genetic ‘word’ which, in healthy individuals, is consecutively repeated up to about 20 times. However, in the Welsh and Dutch families and a large proportion of the Finnish familial cases, the 6-letter word was repeated as many as 250 times. This phenomenon is known as a ‘repeat expansion’. The researchers went on to check for this repeat expansion in familial MND cases from North America, Germany and Italy, and found it cropped up in 38% of them. They even found it in a much smaller proportion of sporadic cases from Finland, suggesting that it could be an important risk factor in at least some people with the  non-inherited form of the disease.

What does the discovery mean for MND research?

Despite the fact that the repeat expansion does not directly affect the instructions for building a protein, there is good reason to believe that it can still lead to significant neuronal damage. At the moment it is not fully understood how this happens, but one possibility is that it leads to the production of excessive and consequently toxic quantities of RNA, the molecule that provides the cell with a more usable copy of DNA. Disruption to RNA processing has already been implicated as a disease mechanism in MND – this is the pathway through which faulty TDP-43 and FUS are thought to exert their effects – so C9ORF72 may provide scientists with another piece of the RNA jigsaw.

The effect of the repeat expansion is clearly open to influence. Among those people with the repeat expansion, some experienced only FTD, others showed only muscle weakness, and some had both MND and FTD.  The reasons for this variation in symptoms will be just one area that scientists will now want to look into. This overlap between MND and FTD is something that researchers are very keen to understand, and the C9ORF72 discovery may be the key to solving this puzzle. They will also want to better understand how the repeat expansion causes damage, and that will include trying to find out what C9ORF72 actually does – at the moment this is unknown. (Maybe it’ll get a more interesting name along the way!) Building on the new finding in this way could help move us closer to an effective treatment.

For now, a more tangible consequence of the discovery could be a genetic test for people already diagnosed with familial MND who want to understand more about the basis of their disease. Such a test will take a little time to develop but should become available in the UK in the next few months. When it does, it will be accessible to genetics labs across the country. Anyone interested should speak to their doctor or specialist nurse.  

Dead heat

Just as archaeologists might question whether a newly discovered artefact is the real thing, so scientists need double-checking when they claim to have made a new discovery. Fortunately, a second team hit upon C9ORF72 at exactly the same time, and their results will be published alongside the work described here, in the journal ‘Neuron’. The race to the ‘Lost Ark’ of chromosome 9 ended in a tie, but has provided the research community with a major piece of the MND puzzle on which to build future discoveries.

Article: Renton A, Majounie E, Waite A et al. A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked amyotrophic lateral sclerosis-frontotemporal dementia. Neuron (2011).

Read our press release on the C9ORF72 story.

Prof Siddharthan Chandran talks about the recipe for stem cell success at our Annual Conference

Neural progenitor cells, courtesy of Chandran lab, University of Edinburgh

Neural Progenitor cells, courtesy of Prof Chandran lab, University of Edinburgh

We invited Prof Siddharthan Chandran to be our keynote speaker at our Annual Conference and below we’ve provided a brief overview of his presentation which we hope you’ll find useful as either a recap if you attended or as an insight into MND and stem cells if you couldn’t make it on the day.

About Prof Chandran

Prof Chandran is Professor of Neurology at the University of Edinburgh and Director of the Euan MacDonald Centre for MND Research which is based at the university. He is leading the Association’s largest stem cell research programme which pulls together world-class researchers from leading institutes in Edinburgh, London and New York. Working together, the international research teams are manipulating stem cells to provide a unique tool for studying MND and developing new drugs. It’s research programmes like this, that really demonstrate our role as a leader in funding and promoting cutting-edge MND research. Naturally we were only too pleased to introduce Prof Chandran to our conference delegates.

Origins of understanding the power of stem cells

Prof Chandran began his talk on a mythological level with the story of Prometheus, who was punished by the Greek God Zeus by being chained to a rock and having his liver eaten daily by an eagle, only to have it grow back the next day to endure the torture again. Not a very nice story, but Prof Chandran went on to explain that through this myth, the Greeks had stumbled onto the origins of understanding the nature of stem cells. The liver is one of the only solid organs that we have that has the power to regenerate itself when damaged. Although this wasn’t the moral of the myth, it’s still an important historical reference that demonstrates that the potential of stem cells as a regenerative tool is not a new concept.

From science fiction to science fact

If Prof Chandran, while at university, had suggested that in the future it would be possible to create stem cells from a skin sample, he said that he would have been ridiculed and the idea would’ve been seen as pure science fiction. Yet here we are, now living in ‘the future’ and this technology is a reality, the newest finding of which was the discovery of stem cell-like cells called ‘induced pleuripotent stem cells’ (or iPS cells for short) in 2008 by a Japanese research group. By delivering a cocktail of chemicals to skin cells donated by a living person, they were able to turn back the clock of the skin cells to turn them into iPS cells. This finding is now the cornerstone of many new stem cell research projects, which has arguably revolutionised the field.

Future treatment potential, but currently regeneration is impractical

There are many ways that stem cells could be used in the future to treat MND, but using them to regenerate motor neurones is not currently a practical solution. But why isn’t this practical? In his talk, Prof Chandran explained…

Crossing wires

The brain is a very complex organ and can be related to a ball of wiring, with each wire being linked to a specific place within the brain and body. If this were to be wired up inaccurately, then it would cause pandemonium in our bodies, with movement instructions meant for our feet to possibly end in our hands, mouth or elbow for example – something we’d definitely not want to happen!

Prof Chandran went onto explain that each neurone has its own ‘postcode’ in the brain, and depending on where it ‘lives’, he explained that its function will vary.

The function of each motor neurone will also intuitively denote what muscle it’s supposed to connect to. The way that our neurones grow toward a muscle is an extremely well orchestrated affair, with chemical messages throughout the body that either attract, or repulse it. However, as our bodies develop in the womb, this system is switched off – meaning that any new motor neurones trying to grow from scratch in the brain will find it near to impossible to know where it’s supposed to go.

It is therefore a very complicated issue to try and regenerate motor neurones in humans to ensure that the motor neurone firstly starts in the right place, and secondly that the neurone has the right instructions in place to guide it toward its target muscle.  However, these aren’t the only issues that researchers face…

Being sure it’s a motor neurone

In our search for using stem cells as a treatment for MND, there is also an issue of making sure that stem cells turn into the cells you want them to be, and Prof Chandran eloquently explained this by using a video of heart cells, generated using stem cell technology and saying that you definitely wouldn’t want these cells beating away in your brain instead of your motor neurones!

But how do researchers turn stem cells into the ‘right’ sort of cell? Prof Chandran explained that this is done quite simply, by giving them the right recipe of chemical ingredients to tell them what to become when they’re older.

Neurones are slow growers

Even if researchers could somehow ensure that ‘new’ motor neurones could be created and would connect to the right ‘postcode’ of the brain, neurones are very slow growing. As some of our motor neurones would have to grow over a metre to reach its target muscle, the amount of time that it would take to regenerate motor neurones would be implausible in terms of using them as a treatment. There just isn’t a way to speed this up at the moment.

For all of the above reasons, this is why stem cells cannot currently be used to regenerate motor neurones as a treatment for MND. However, this is not to say that they don’t have other uses…

Using stem cells to learn more about MND

Stem cells are great tools for recreating diseases in a dish, as they are able to divide to create large numbers of cells and are able to turn (with the right receipe) into any type of cell, such as a motor neurones.

In his laboratory, Prof Chandran’s research group have created living human motor neurones grown in a dish from skin cells donated by people with an inherited form of MND using iPS cell technology. In his presentation, he showed us that within 100 days, his laboratory is able to create a billion (1012, referred to as a trillion in USA) cells from a stem cell. He has also shown that these motor neurones generated from stem cells connect to muscle cells and are electrically active – which means that to all intents and purposes, they are real motor neurones.

He then explained that his MND Association funded project is creating these motor neurones and support cells from a skin biopsy of somebody with MND with faults in a gene called TDP-43. They can then use these new cells as a tool to investigate the disease process and hopefully in the future to test the effectiveness of therapies in this model.

Realising the potential of stem cells

As well as using stem cells to create new models in the laboratory, to discover new medicines, stem cells could potentially be used in a different way to treat the disease. These treatments would not aim to regenerate the motor neurones, but instead would attempt to slow down, or even stop the disease.

Realistically, researchers could use neurone support cells to provide a protective environment to lasting motor neurones – in fact, there are plans in place to test such a treatment which is estimated to being enrolling in 2014 (see stem cell conference blog article for more information).

Overall, Prof Chandran’s talk was extremely well received with delegates commenting to us that “Prof Chandran was the best speaker I can recall” and Prof Chandran’s talk was: “clear, hopeful, excellent. He inspired confidence and spoke in language I could understand”

We’re pleased that so many people who attended our AGM and Annual Conference enjoyed Prof Chandran’s talk, with 91.2% of delegates saying that it was “excellent” (from our survey of 57 people who attended).

Find out more about stem cells on our website.

Stay up-to-date with news on our next conferences by following our conference team on Twitter @mndconference

NP001: Dr Brian Dickie’s comments…

I’m sure many of you who follow our blog have also been following the discussion on our forum about the Neuraltus trial for a drug called NP001. First of all, thanks to ‘Matt J’ for initially raising this issue on our forum. It highlights the power of the forums in facilitating information spread and getting new news out to the community quickly. I also appreciate his initial trepidation in posting as it illustrates some of the ‘messier’ aspects of forum-based communication, such as the difficulty in following threads and in separating the ‘wheat’ from the ‘chaff ‘in terms of evidence.

Secondly, the disclaimer. It is not the Association’s role to provide medical advice. We’re not clinicians. Where possible, we’ll try to present the facts as we understand them, throwing in a few assumptions or speculation where it’s unavoidable.

This relates to a third point. NP001 is a North American trial. If it were a UK trial we would undoubtedly know much more about it and be in closer contact with the company. The downside of a closer relationship is that Patient Organisations have to sign a Confidentiality Disclosure Agreement (CDA) with the company, which restricts the amount of information that can be disseminated. I suspect this is probably the case for some of our North American counterparts. So this means that while our information is more limited that we would like, we are at least in a position to communicate something.

At the moment we simply don’t know whether NP001 is working or not. I appreciate the frustration that statement will generate, but there are some issues that have to be discounted before any conclusions can start to be drawn and these form a large part of the rest of this blog.

I’m going to spend some time on the underlying biology of MND as it is highly relevant to this issue. I’ve tried to make it accessible and not cut too many corners, but given the different degrees of knowledge among our readership, it can be difficult to pitch at the right level, so I hope it is understandable to all, but does not come across as simplistic or even patronising to some. That is certainly not my intention. Neuroscience and Immunology are arguably the two most complex subjects in medical science and drug trial design in MND is a ‘dark art’ in itself. I can’t claim to be speaking with authority on every aspect.

How do we think NP001 works?

From what we know, NP001 affects the activity of modified white blood cells called macrophages, which are an important part of the immune system and, among other roles, are involved in inflammation. Macrophage activity and proliferation increases alongside disease progression in MND. Neuraltus are seeking to prove that reducing macrophage activation with NP001 has a beneficial effect on disease progression. They have not stated clearly how they expect lower numbers of activated macrophages to achieve this. However, the mechanism probably involves cells called microglia.

Microglia are macrophages that have infiltrated the central nervous system (CNS). Unlike the rest of the body, the CNS does not have an immune system, so it relies on microglia as a key part of the ‘defence system’ here. Previous research, mainly based on SOD1 mouse models of MND, has shown that microglia play an important role in influencing the progression of MND but they do not appear to be involved in triggering the disease in the first place. Instead, they form part of a specialised inflammatory response which aggravates the initial problem. We know that MND is not primarily an immune system disorder because treatments like immunoglobulin, which impact significantly to depress immune system, responses, have no effect on the disease.  Controlling microglia activity more selectively is a valid strategy which may help slow the progression of MND but as it is probably addressing a secondary pathology rather than the primary pathology, the strategy is aimed at slowing disease progression rather than stopping or reversing it.  

Neuraltus may believe that, because macrophages give rise to microglia, a reduction in macrophage activity and numbers in the blood will be paralleled by a reduction in microglia activity in the CNS. However, macrophages also produce lots of chemical messengers that act to promote inflammation in general – within the CNS it’s microglia that respond to these messages. It may be that Neuraltus scientists are working on the theory that reducing the production of these inflammatory messengers may limit inflammation in the central nervous system, at least in part through decreased stimulation of microglia. Whatever the precise mechanism, they intend to measure macrophage levels and activity as a ‘biomarker’, to demonstrate that the drug is at least hitting its intended target.

Could NP001 have an instant effect?

One of the members of our forum commented that the reported changes within a few hours were surely too fast to be drug related? I’d tend to agree.

The CNS has an amazing capacity for compensation – this is particularly the case in Parkinson’s disease, where up to 80% of the vulnerable neurones have degenerated before the first appearance of symptoms. Even in MND it’s estimated that by the time a muscle group is affected, it will already have lost up to 50% of its neuronal connections.   

The compensation occurs by a process called collateral innervation (or compensatory innervation). In a nutshell, if a motor neurone cell dies back from its target muscle, the muscle releases neurotrophic factors that attract a neighbouring, healthier, neurone to literally ‘sprout’ a new connection, but this will take place over a longer timecourse than a few hours. A really good example of this process in action comes from looking at polio patients.

Polio is caused by a virus (poliovirus) that wipes out a large number of motor neurones in an instant, causing paralysis.  However, people can often recover partial or complete function, caused by the compensatory innervation by the surviving motor neurones. This process takes a long time, as many people who contracted the virus in childhood in the 1940s/50s and spent many months, even longer, in ‘iron lungs’, will testify. 

So, the first point is the rapidly reported changes are too rapid. This doesn’t discount, for example, a drug effect directly on the muscles rather than the nerves themselves, perhaps reducing peripheral inflammation, or some other metabolic ‘pick me up’. However, as outlined above, that doesn’t appear to be the mechanism of action of NP001 and certainly not the mechanism by which restoration of function is most likely to occur. 

It’s important to remember that in MND, compensatory innervation is occurring even after the disease symptoms appear. This can explain why any individual can have a plateau phase or even slight transient improvements in muscle function.  So, the second point is that loss of muscle function in any single individual cannot be viewed simply as a straight line, a constant decline.

For a moment, let’s assume that the drug has a quick acting effect. The question that follows is whether it is a short-term or a long-term effect? It could be transient.

The only way of working that out is through continuing the trial for a longer period. I am less familiar with FDA regulations, but the NP001 trial will have an independent Data Monitoring Committee, which will confidentially review the trial data at various timepoints, with predefined ‘stopping rules’. This is primarily carried out for safety, to ensure the drug is not making things worse. However, such committees are also able to flag up any significant positive deviations due to the drug, but they would need to be convinced that this was not down to the inherent variation in disease progression within and between individuals (some of which has already been discussed) and/or a statistical ‘glitch’ due to the low power of the study (by that I mean not enough participants). I completely understand the need for answers as quickly as possible – this is a disease where time is very much a luxury. It makes my third point that more difficult to state: basically, the trial needs to run its course and calls for the discontinuation of the current NP001 trial are premature.

If the results from the current Phase II trial are outstandingly positive, it is possible that the company could attempt to apply for licensing straight away. In this case, their first port of call would be the FDA in America, which has already granted NP001 ‘fast track’ status. This is a commitment to dealing with the licensing paperwork quickly but is not an endorsement of efficacy. ‘Fast tracking’ does not automatically mean that a Phase III trial will not be necessary – if the data from the Phase II trial are encouraging but not significant enough to be conclusive, then the company would need to proceed to Phase III.

The FDA has no influence over UK licensing. We will investigate whether there is anything we can do to hurry the European licensing authority along in the event that the Phase II trial or a future Phase III trial produces positive results. Ultimately though, while we may be able to try and ‘pull’ things along from this end, it is up to the company to ‘push’ by making the application in the first place.

As has been mentioned elsewhere, information on NP001 will be presented at this year’s International Symposium in Sydney (30 November – 2 December 2011). I believe that the Phase I study data, which was also performed in MND patients, will be presented. That should at least tell us whether any rapid effects were seen in that preliminary study.

This leads to a point which I approach with a great deal of trepidation, but it needs to be raised. With all the discussion on NP001, there hasn’t been much said about the placebo effect but it does offer one explanation for the improvements claimed by some of the participants. I’ll talk firstly from personal experience of 15 years in working in the MND field. In virtually every major trial I can recall (myotrophin, xaliproden, creatine, BDNF, pentoxiffyline, etc) there are invariably a small number of claims of improvements which have unfortunately not been borne out by the trial results. Additionally, in every clinical trial, participants in the placebo group also experience ‘adverse events’ that could be perceived as drug side effects, but are unrelated.

Let me give you an example, which was presented at the symposium several years ago. A pilot randomized, placebo-controlled trial of creatine was performed. Participants were assessed in a variety of ways, including direct objective measures of muscle strength (maximum voluntary isometric contraction). Participants were assessed before their first dose (baseline) then at 1,2,3 weeks, 4 months and 9 months.  When the results were analysed, it showed that those on the creatine arm showed an improvement in muscle strength in the first week and no overall decline from baseline in the first three weeks. However, those on the placebo also showed a subtle increase in the first week and no overall decline from baseline over the first three weeks. At the 4-month timepoint there was a marked decline in both groups, which was much more pronounced at the 9-month timepoint. As we know, the initial excitement of creatine was not supported in larger, more comprehensive trials. Basically, this illustrates another reason why the NP001 trial needs to be performed for longer.

 What about WF-10?

A colleague with extensive experience in drug discovery in the pharmaceutical industry has trawled though numerous patents to try and work out whether WF-10 and NP001 are one and the same, but were unable to reach that conclusion. Patents are legal, not scientific documents, so the scientific detail is often substandard or absent. The proposed mechanisms are certainly similar and the main active component is probably the same but the chemical formulation of NP001 is not available (if anyone can find it, please let me know). On the evidence available, we suspect that the two are different and we can speculate that NP001 is possibly a ‘souped-up’ version of WF-10 – either an improved formulation or a combination of more than one drug acting on inflammation /immunity. Either way, the bottom line is that if NP001 is ineffective, WF-10 probably will be too.

Some of our forum members have asked if we could organise a trial of WF-10. As you will appreciate from the previous paragraphs, there is no such thing as a quick or simple trial so the NP001 results would be known a long time before a WF-10 trial could come to fruition. Besides this, there is no reliable laboratory or clinical evidence to support the use of WF-10 in MND. While Nuvo Research and its subsidiaries have researched WF-10 in relation to a number of other macrophage-associated diseases, they have only hypothesised that it may be helpful in MND. Outside of a mention in a patent document of its short-term administration in two MND patients many years ago, they have not actually studied its effects in neurodegenerative disease.  

As you know, ALS Untangled is going to look into the evidence for WF-10 and have told us it’s next on their list. I don’t think we can pin them down to a date, as each review depends on the quality, quantity and availability of information, but they have at least moved the likely date forward from end of the year. The clinicians who are members of ALS Untangled are the best qualified to review the data and we will forward anything we find to them – including relevant information that our forum members may discover. I know that their objectivity has been questioned, given that some may be involved in the NP001 trial, but any such concerns are unfounded.

Some of you have asked about access to WF10 on a compassionate use basis.  As neither of these drugs is licensed for use in any condition in the UK, the situation is far more complex than for a licensed drug like lithium, which can more simply be prescribed ‘off label’ due to its use in treating other CNS-related conditions for the past 40 years.

The decision to proceed with compassionate use rests entirely with clinicians. In theory, consultants can prescribe unlicensed drugs like WF-10 to a particular individual (or ‘named patient’), provided that they and the NHS Trust they work for are prepared to accept complete responsibility for the consequences. I n the case of WF-10 they would need to do this for a drug that they have no previous experience of and for which there is not yet any evidence of efficacy in MND. Even if a consultant did decide to prescribe WF-10, the Medicines and Healthcare Regulatory Agency (MHRA), which oversees the licensing of medicines in the UK, must still grant permission for the unlicensed drug to be imported into the country for that particular patient. In order to give this permission, the MHRA will need to be satisfied that the patient has a ‘special need’ for the unlicensed drug. Although everyone with MND has a desperate need for effective treatments, the MHRA definition of ‘special need’ means a need that is relatively unique to that individual, such as an allergy to an ingredient in the equivalent licensed drug.

I hope the information provided is helpful.  These are exciting times in MND research – new knowledge about the disease is emerging fast and we are seeing an increasing number of trials emerging around the world – but due to the complexity of MND, these trials move at a speed that appears ‘glacial’ and NP001 is no exception. Only time can tell if we are looking at a genuine ray of hope and not another false dawn.

NEW Grants Round……..NEW way of Applying!!!

Today is a big day for the research grants team as we are launching our online summary application form for researchers applying for biomedical* project grants and PhD studentships.

*Biomedical projects are laboratory-based. They aim to identify potential causes of MND, increase scientific understanding of the mechanisms of motor neurone degeneration and develop potential new treatments.

This new system will streamline the summary stage of our application process, making full use of our grants management system allowing all submitted summaries to be uploaded straight into it, minimising the amount of manual data input which is currently required.

Importance of consistency
Consistency in the information provided by applicants will increase as the new online form stipulates exactly what we need to know about the projects. Each summary will be pulled into a template, providing uniformity with layout and information on each project. This will make it easier for our group of MND experts made up of clinicians and scientists, called the Biomedical Research Advisory Panel (BRAP), to review each application and come to an informed decision as to whether we should consider funding it.

Applicants will be able to return to their summary as many times as needed before submission. Also, more than one summary application can be submitted per applicant, with a log of their summary applications being listed on the online system for the applicant to view. This will make the process of submitting a summary application to us smoother for researchers.

Maintaining high standards
Each application for MND Association funding undergoes rigorous review by independent scientists and our independent biomedical and healthcare research advisory panels. By evolving our summary application process to use an online system, we are able to ensure that our high standards are maintained and that we are using our time efficiently and effectively to fund high-quality research.

Only one in five research applications is considered of a high enough standard for funding, but through our rigorous process we can provide our donors with the assurance that they are supporting the ‘very best of the best’ MND research. We’ve recently received our certificate of best practice from the Association of Medical Research Charities (AMRC), of which we are a member, for our peer review system in which they stated that we are: “considered as setting the standard for best practice within the audit”. You can read more about this in a blog article by Dr Brian Dickie.

I’m a researcher and I want to use your snazzy new online system to submit an application for MND research funding…
If you are a researcher and want to apply for a research project grant or PhD studentship please go to our website www.mndassociation.org and click on the research summary application link. 

The deadline for the next biomedical research grants round is Friday 21 October 2011

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